Thanks for the comments guys.

Alexander, Tony is correct and the gap is where the transmission bolt strip was meant to go. From the way I saw it, there was no good way to attach the strip to either the upper hull or the transmission cover without in turn leaving a little gap that might need filling. After gluing the upper hull to the lower hull I used tube cement (longer working time) to attach the transmission cover. before it dried I was able to dry fit the bolt strip so there would be no gaps. This was my solution to a problem that I had experienced with a previous Sherman build. I ran out of the olive drab that I was using and the LHS also was out of stock so I used the Tamiya OD on the bolt strip and that's why the darker colour.
Now on with the show!
While I originally had no plans to use the PE, it intimidated the heck out of me, I lost my mind and figured I'd experiment with trying it. If I messed it up I could just leave it off and the tank would still look fine.
This past Christmas my SWMBO had gotten me one of those "helping hands" tools and it turned out to be invaluable with trying to make the stacks/trunks. The first part I tackled was the lower section of the exhaust trunk. Despite the number of bends that it required, it seemed like the easiest.
The parts were all cut off the fret using a regular #11 Xacto blade and a steel straight edge. When necessary I filed any attachment points that stood out with a flat jewellers file held in smooth jawed pliers. For bending the straighter pieces I used the straight edge and when necessary, a dull Chopper blade to lift he narrower sections to be bent. It was a slow process as this experience was totally new to me.
Here's the start of it in the new jig.

I used gap filling CA glue throughout the PE fabrication. I roughed up the mating surfaces with a file to help with adhesion and in many cases the joints were reinforced with strips of styrene. This PE was a real nightmare for me to work with as there are no locating tabs or anything like that to help with alignment.
Next I started on the intake trunk and that in itself turned out to be a marathon endeavour. The worst part was getting the rounded part at the top so that it met the rounded side piece properly. I bent and re-bent these sections about a dozen or more times until I got them as close to the right shape as possible. For this process I used various diameter Plastruct tubing. Here's the final result.

I completed the lower exhaust trunk and and used the CA glue to fill a few gaps that showed. The dark grey paint you see is to help determine what needs more work. The base for the intake stack took almost an entire afternoon to get all the bends and angles correct. There were a few compound angles and joints to deal with and the back of the base is only one millimetre high (the other sides were 1.5 mm high at the most). What you see in the next pictures are all dry fitting of the parts.



During this time I found myself having to re-glue and in some cases reinforce joints that would fail during the filing of edges. It wasn't until this point that I actually though that I just might be able to actually get everything to work out.

The upper exhaust piece turned out to be a monster to shape and form. To get it to line up with the lower sections meant re-bending so many times that the side pieces broke due to metal fatigue. I can't recall how many times I had to re-glue and reinforce parts.

I used projecting strips of styrene sheet to act as a guide for placing the top exhaust part on the lower section. The pictures show dry fitted sections.


Again, the paint on the parts was meant to assist with catching flaws to be corrected. Just to clarify, while I am posting this Blog over a few days the actual process took many sittings over an extended period (weeks?). More than a few times I was ready to give up.
Last but not least, the intake base is attached and the upper exhaust piece is glued to the lower part. A detail strip was added to the front and back along where the two pieces mate. Again there was the need to file, fill, file, fill...

As you can see in the image above, the intake trunk has quite a bit of space around the base after inserting it. This will be partly covered by a trim piece. It was that trim piece that was folded to go around the entire base that had me scratching my head for almost a week. Under the base is the Sherman intake grill and by its nature wouldn't allow the stack to sit properly. All my first attempts to position it properly ended up with the base breaking free more than once. Again, there were no tabs or other features to assist you with positioning or to provide a decent gluing surface. In all cases all you have to work with is surface areas the width of the PE. This type of experience is not for a beginner and it might be helpful to be a masochist!
Cheers,
Jan